Publikace
| Celkem nalezeno: 66 záznamů |
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Mata-Sucre Y., Krátká M.,
Oliveira L.,
Neumann P.,
Macas J., Schubert V., Huettel B., Kejnovský E., Houben A., Pedrosa-Harand A., Souza G., Marques A. (2024) Repeat-based holocentromeres of the woodrush Luzula sylvatica reveal insights into the evolutionary transition to holocentricity Nature Communications
15: 9565.
DOI: 10.1038/s41467-024-53944-5 |
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Novák P.,
Hoštáková N.,
Neumann P.,
Macas J. (2024) DANTE and DANTE_LTR: computational pipelines implementing lineage-centered annotation of LTR-retrotransposons in plant genomes. NAR Genomics and Bioinformatics
6(3): lqae113.
DOI: 10.1093/nargab/lqae113 |
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Oliveira L.,
Neumann P., Mata-Sucre Y., Kuo Y.-T., Marques A., Schubert V.,
Macas J. (2024) KNL1 and NDC80 represent new universal markers for the detection of centromeres in plants. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology
3(1): 3.
DOI: 10.1007/s10577-024-09747-x |
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Xin H., Wang Y., Zhang W., Yu B.,
Neumann P., Ning Y., Zhang T., Wu Y., Jiang N., Jiang J., Xi M. (2024) Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes Plant Physiology
195(4): 2787–2798.
DOI: 10.1093/plphys/kiae214 |
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Jayakodi M., Golicz A.A., Kreplak J., Fechete L.I., ...,
Koblížková A.,
Neumann P.,
Novák P.,
Avila Robledillo L.,
Macas J., et al. (2023) The giant diploid faba genome unlocks variation in a global protein crop Nature
615 (7953): 652–659.
DOI: 10.1038/s41586-023-05791-5 |
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Kuo Y.-T., Camara A.S., Schubert V.,
Neumann P.,
Macas J., Melzer M., Chen J., Fuchs J., Abel S., Klocke E., Huettel B., Himmelbach A., Demidov D., Dunemann F., Mascher M., Ishii T., Marques A., Houben A. (2023) Holocentromeres can consist of merely a few megabase-sized satellite arrays Nature Communications
14: 3502.
DOI: 10.1038/s41467-023-38922-7 |
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Macas J.,
Avila Robledillo L., Kreplak J.,
Novák P.,
Koblížková A.,
Vrbová I., Burstin J.,
Neumann P. (2023) Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes PLoS Genetics
19(2): e1010633.
DOI: 10.1371/journal.pgen.1010633 |
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Neumann P.,
Oliveira L.,
Jang T.,
Novák P.,
Koblížková A., Schubert V., Houben A.,
Macas J. (2023) Disruption of the standard kinetochore in holocentric Cuscuta species Proceedings of the National Academy of Sciences
120: e2300877120.
DOI: 10.1073/pnas.230087712 |
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Hofstatter P.G., Thangavel G., Lux T.,
Neumann P.,
Vondrak T.,
Novák P., Zhang M., Costa L., Castellani M., Scott A., Toegelová H., Fuchs J., Mata-Sucre Y., Dias Y., Vanzela A., Huettel B., Almeida C.C.S., Šimková H., Souza G., Pedrosa-Harand A.,
Macas J., Mayer K., Houben A., Marques A. (2022) Repeat-based holocentromeres influence genome architecture and karyotype evolution Cell
185: 1-16.
DOI: 10.1016/j.cell.2022.06.045 |
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Neumann P., Oliveira L., Čížková J.,
Jang T.,
Klemme S.,
Novák P., Stelmach K.,
Koblížková A., Doležel J.,
Macas J. (2021) Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta New Phytologist
229: 2365–2377.
DOI: 10.1111/nph.17003 |
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Vondrak T.,
Oliveira L.,
Novák P.,
Koblížková A.,
Neumann P.,
Macas J. (2021) Complex sequence organization of heterochromatin in the holocentric plant Cuscuta europaea elucidated by the computational analysis of nanopore reads Computational and Structural Biotechnology Journal
19: 2179-2189.
DOI: 0.1016/j.csbj.2021.04.011 |
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Ainouche A., Paris A., Giraud D., Keller J., Raimondeau P., Mahé P.,
Neumann P.,
Novák P.,
Macas J., Ainouche M., Salmon A., Martin G.E. (2020) The Repetitive Content in Lupin Genomes In: Singh K., Kamphuis L., Nelson M. (eds) The Lupin Genome. Compendium of Plant Genomes.
161-168.
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Avila Robledillo L.,
Neumann P.,
Koblížková A.,
Novák P.,
Vrbová I.,
Macas J. (2020) Extraordinary sequence diversity and promiscuity of centromeric satellites in the legume tribe Fabeae Molecular biology and evolution
37: 2341-2356.
DOI: 10.1093/molbev/msaa090 |
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Novák P., Guignard M.S.,
Neumann P., Kelly L., Mlinarec J.,
Koblížková A., Dodsworth S., Kovařík A., Pellicer J., Wang W.,
Macas J., Leicht I.J., Leicht A. (2020) Repeat-sequence turnover shifts fundamentally in species with large genomes Nature Plants
6: 1325–1329.
DOI: 10.1038/s41477-020-00785-x |
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Novák P.,
Neumann P.,
Macas J. (2020) Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2 Nature Protocols
15: 3745-3776.
DOI: 10.1038/s41596-020-0400-y |
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Oliveira L.,
Neumann P.,
Jang T.,
Klemme S., Schubert V.,
Koblížková A., Houben A.,
Macas J. (2020) Mitotic spindle attachment to the holocentric chromosomes of Cuscuta europaea does not correlate with the distribution of CENH3 chromatin Frontiers in plant science
10: 1799.
DOI: 10.3389/fpls.2019.01799 |
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Schubert V.,
Neumann P., Marques A., Heckmann S.,
Macas J., Pedrosa-Harand A., Schubert I.,
Jang T., Houben A. (2020) Super-Resolution Microscopy Reveals Diversity of Plant Centromere Architecture International Journal of Molecular Sciences
21 (10): 3488.
DOI: 10.3390/ijms21103488 |
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Vondrak T.,
Avila Robledillo L.,
Novák P.,
Koblížková A.,
Neumann P.,
Macas J. (2020) Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats The Plant Journal
101: 484–500.
DOI: 10.1111/tpj.14546 |
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Kreplak J., Madoui M., Cápal P.,
Novák P., Labadie K., Aubert G., Bayer P.E., Gali K.K., Syme R.A., Main D., Klein A., Bérard A.,
Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee H.T., Kougbeadjo A., Térézol M., Huneau C., Turo Ch.J., Mohellibi N.,
Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury J.-M., Batley J., Le Paslier M.-Ch., Ellis N., Warkentin T., Coyne C., Salse J., Edwards D., Lichtenzveig J.,
Macas J., Doležel J., Wincker P., Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution. Nature Genetics
51: 1411–1422.
DOI: 10.1038/s41588-019-0480-1 |
| Neumann P., Novák P., Hoštáková N., Macas J. (2019) Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification Mobile DNA 10: DOI: 10.1186/s13100-018-0144-1 |
