Publications
| Total found: 66 records |
|---|
|
Avila Robledillo L.,
Koblížková A.,
Novák P.,
Böttinger K.,
Vrbová I.,
Neumann P., Schubert I.,
Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports
8: 5838.
DOI: 10.1038/s41598-018-24196-3 |
|
Novák P.,
Avila Robledillo L.,
Koblížková A.,
Vrbová I.,
Neumann P.,
Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research
45 (12): e11.
DOI: 10.1093/nar/gkx257 |
|
Wang G., He Q.,
Macas J.,
Novák P.,
Neumann P., Meng D., Zhao H., Guo N., Han S., Zong M., Jin W., Liu F. (2017) Karyotypes and distribution of tandem repeat sequences in Brassica nigra determined by fluorescence in situ hybridization Cytogenetics and genome research
152: 158-165.
DOI: 10.1159/000479179 |
|
Neumann P., Schubert V.,
Fuková I.,
Manning Jr J., Houben A.,
Macas J. (2016) Epigenetic Histone Marks of Extended Meta-Polycentric Centromeres of Lathyrus and Pisum Chromosomes Frontiers in plant science
7: 234.
DOI: 10.3389/fpls.2016.00234 |
|
Kelly L., Renny-Byfield S., Pellicer J.,
Macas J.,
Novák P.,
Neumann P., Lysák M., Day P., Berger M., Fay M., Nichols R., Leitch A., Leitch I. (2015) Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size New Phytologist
208: 596-607.
DOI: 10.1111/nph.13471 |
|
Macas J.,
Novák P., Pellicer J., Čížková J.,
Koblížková A.,
Neumann P.,
Fuková I., Doležel J., Kelly L., Leitch I. (2015) In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae PLoS ONE
10 (11): e0143424.
DOI: 10.1371/journal.pone.0143424 |
|
Marques A., Ribeiro T.,
Neumann P.,
Macas J.,
Novák P., Schubert V., Pellino M., Fuchs J., Ma W., Kuhlmann M., Brandt R., Vanzela A., Beseda T., Šimková H., Pedrosa-Harand A., Houben A. (2015) Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin Proceedings of the National Academy of Sciences of the United States of America
112: 13633-13638.
DOI: 10.1073/pnas.1512255112 |
|
Neumann P., Pavliková Z.,
Koblížková A.,
Fuková I., Jedličková V.,
Novák P.,
Macas J. (2015) Centromeres off the hook: massive changes in centromere size and structure following duplication of CenH3 gene in Fabeae species Molecular biology and evolution
32 (7): 1862-1879.
DOI: 10.1093/molbev/msv070 |
|
Tran T., Cao H., Jovtchev G.,
Neumann P.,
Novák P., Fojtová M., Vu G.,
Macas J., Fajkus J., Schubert I., Fuchs J. (2015) Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea Plant Journal
84 (6): 1087-1099.
DOI: http://dx.doi.org/10.1111/tpj.13058 |
| Vu G., Schmutzer T., Bull F., Cao H., Fuchs J., Tran T., Jovtchev G., Pistrick K., Stein N., Pečinka A., Neumann P., Novák P., Macas J., Dear P., Blattner F., Scholz U., Schubert I. (2015) Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus Plant Genome 8: DOI: 10.3835/plantgenome2015.04.0021 |
|
Novák P., Hřibová E.,
Neumann P.,
Koblížková A., Doležel J.,
Macas J. (2014) Genome-wide analysis of repeat diversity across the family Musaceae PLoS ONE
9: e98918.
DOI: 10.1371/journal.pone.0098918 |
|
Heckmann S.,
Macas J., Kumke K., Fuchs J., Schubert V., Ma L.,
Novák P.,
Neumann P., Taudien S., Platzer M., Houben A. (2013) The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization Plant Journal
73: 555-565.
DOI: 10.1111/tpj.12054 |
|
Novák P.,
Neumann P., Pech J., Steinhaisl J.,
Macas J. (2013) RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads Bioinformatics
29: 792-793.
DOI: 10.1093/bioinformatics/btt054 |
|
Gong Z., Wu Y.,
Koblížková A., Torres G., Wang K., Iovene M.,
Neumann P., Zhang W.,
Novák P., Buell C.,
Macas J., Jiang J. (2012) Repeatless and repeat-based centromeres in potato: implications for centromere evolution Plant Cell
24: 3559-3574.
DOI: 10.1105/tpc.112.100511 |
|
Martis M., Klemme S., Banaei-Moghaddam A., Blattner F.,
Macas J., Schmutzer T., Scholz U., Gundlach H., Wicker T., Šimková H.,
Novák P.,
Neumann P., Kubaláková M., Bauer E., Haseneyer G., Fuchs J., Doležel J., Stein N., Mayer K., Houben A. (2012) Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences Proceedings of the National Academy of Sciences of the United States of America
109: 13343-13346.
DOI: 10.1073/pnas.1204237109 |
|
Neumann P.,
Navrátilová A., Schroeder-Reiter E.,
Koblížková A.,
Steinbauerová V., Chocholová E.,
Novák P., Wanner G.,
Macas J. (2012) Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains. PLoS Genetics
8: e1002777.
DOI: 10.1371/journal.pgen.1002777 |
|
Ambrožová K., Mandáková T., Bureš P.,
Neumann P., Leitch I.,
Koblížková A.,
Macas J., Lysák M. (2011) Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies Annals of Botany
107: 255-268.
DOI: 10.1093/aob/mcq235 |
|
Macas J., Kejnovský E.,
Neumann P.,
Novák P.,
Koblížková A., Vyskot B. (2011) Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia PLoS ONE
6: e27335.
DOI: 10.1371/journal.pone.0027335 |
| Neumann P., Navrátilová A., Koblížková A., Kejnovský E., Hřibová E., Hobza R., Widmer A., Doležel J., Macas J. (2011) Plant centromeric retrotransposons: a structural and cytogenetic perspective Mobile DNA 2: DOI: 10.1186/1759-8753-2-4 |
|
Steinbauerová V.,
Neumann P.,
Novák P.,
Macas J. (2011) A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons Genetica
139: 1543-1555.
DOI: 10.1007/s10709-012-9654-9 |
