Mgr. Andrea Koblížková
Job Position: Associated scientist - Molecular cytogenetics
Phone:
+420 387 775 513; +420 387 775 511
E-mail:
andrea@umbr.cas.cz
Web:
w3lamc.umbr.cas.cz/lamc/
Room:
107
| Total found: 38 records
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Vigouroux M.,
Novák P.,
Oliveira L., Santos C., Cheema J., Wouters R.H.M., Paajanen P., Vickers M., Koblížková A., Vaz Patto M.,
Macas J., Steuernagel B., Martin C., Emmrich P.M.F. (2024) A chromosome-scale reference genome of grasspea (Lathyrus sativus) Scientific Data
11
: 1035. DOI: 10.1038/s41597-024-03868-y |
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Jayakodi M., Golicz A.A., Kreplak J., Fechete L.I., ..., Koblížková A.,
Neumann P.,
Novák P.,
Avila Robledillo L.,
Macas J., et al. (2023) The giant diploid faba genome unlocks variation in a global protein crop Nature
615 (7953)
: 652–659. DOI: 10.1038/s41586-023-05791-5 |
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Macas J.,
Avila Robledillo L., Kreplak J.,
Novák P., Koblížková A.,
Vrbová I., Burstin J.,
Neumann P. (2023) Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes PLoS Genetics
19(2)
: e1010633. DOI: 10.1371/journal.pgen.1010633 |
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Neumann P.,
Oliveira L.,
Jang T.,
Novák P., Koblížková A., Schubert V., Houben A.,
Macas J. (2023) Disruption of the standard kinetochore in holocentric Cuscuta species Proceedings of the National Academy of Sciences
120
: e2300877120. DOI: 10.1073/pnas.230087712 |
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Neumann P., Oliveira L., Čížková J.,
Jang T.,
Klemme S.,
Novák P., Stelmach K., Koblížková A., Doležel J.,
Macas J. (2021) Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta New Phytologist
229
: 2365–2377. DOI: 10.1111/nph.17003 |
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Vondrak T.,
Oliveira L.,
Novák P., Koblížková A.,
Neumann P.,
Macas J. (2021) Complex sequence organization of heterochromatin in the holocentric plant Cuscuta europaea elucidated by the computational analysis of nanopore reads Computational and Structural Biotechnology Journal
19
: 2179-2189. DOI: 0.1016/j.csbj.2021.04.011 |
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Avila Robledillo L.,
Neumann P., Koblížková A.,
Novák P.,
Vrbová I.,
Macas J. (2020) Extraordinary sequence diversity and promiscuity of centromeric satellites in the legume tribe Fabeae Molecular biology and evolution
37
: 2341-2356. DOI: 10.1093/molbev/msaa090 |
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Novák P., Guignard M.S.,
Neumann P., Kelly L., Mlinarec J., Koblížková A., Dodsworth S., Kovařík A., Pellicer J., Wang W.,
Macas J., Leicht I.J., Leicht A. (2020) Repeat-sequence turnover shifts fundamentally in species with large genomes Nature Plants
6
: 1325–1329. DOI: 10.1038/s41477-020-00785-x |
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Oliveira L.,
Neumann P.,
Jang T.,
Klemme S., Schubert V., Koblížková A., Houben A.,
Macas J. (2020) Mitotic spindle attachment to the holocentric chromosomes of Cuscuta europaea does not correlate with the distribution of CENH3 chromatin Frontiers in plant science
10
: 1799. DOI: 10.3389/fpls.2019.01799 |
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Vondrak T.,
Avila Robledillo L.,
Novák P., Koblížková A.,
Neumann P.,
Macas J. (2020) Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats The Plant Journal
101
: 484–500. DOI: 10.1111/tpj.14546 |
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Avila Robledillo L., Koblížková A.,
Novák P.,
Böttinger K.,
Vrbová I.,
Neumann P., Schubert I.,
Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports
8
: 5838. DOI: 10.1038/s41598-018-24196-3 |
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Novák P.,
Avila Robledillo L., Koblížková A.,
Vrbová I.,
Neumann P.,
Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research
45 (12)
: e11. DOI: 10.1093/nar/gkx257 |
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Kowar T., Zakrzewski F.,
Macas J., Koblížková A., Viehoever P., Weisshaar B., Schmidt T. (2016) Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta Vulgaris) BMC Plant biology
16
: 120. DOI: 10.1186/s12870-016-0805-5 |
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Macas J.,
Novák P., Pellicer J., Čížková J., Koblížková A.,
Neumann P.,
Fuková I., Doležel J., Kelly L., Leitch I. (2015) In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae PLoS ONE
10 (11)
: e0143424. DOI: 10.1371/journal.pone.0143424 |
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Neumann P., Pavliková Z., Koblížková A.,
Fuková I., Jedličková V.,
Novák P.,
Macas J. (2015) Centromeres off the hook: massive changes in centromere size and structure following duplication of CenH3 gene in Fabeae species Molecular biology and evolution
32 (7)
: 1862-1879. DOI: 10.1093/molbev/msv070 |
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Novák P., Hřibová E.,
Neumann P., Koblížková A., Doležel J.,
Macas J. (2014) Genome-wide analysis of repeat diversity across the family Musaceae PLoS ONE
9
: e98918. DOI: 10.1371/journal.pone.0098918 |
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Zhang H., Koblížková A., Wang K., Gong Z., Oliveira L., Torres G., Wu Y., Zhang W.,
Novák P., Buell C.,
Macas J., Jiang J. (2014) Boom-bust turnovers of megabase-sized centromeric DNA in Solanum species: Rapid evolution of DNA sequences associated with centromeres Plant Cell
26
: 1436-1447. DOI: 10.1105/tpc.114.123877 |
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Gong Z., Wu Y., Koblížková A., Torres G., Wang K., Iovene M.,
Neumann P., Zhang W.,
Novák P., Buell C.,
Macas J., Jiang J. (2012) Repeatless and repeat-based centromeres in potato: implications for centromere evolution Plant Cell
24
: 3559-3574. DOI: 10.1105/tpc.112.100511 |
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Neumann P.,
Navrátilová A., Schroeder-Reiter E., Koblížková A.,
Steinbauerová V., Chocholová E.,
Novák P., Wanner G.,
Macas J. (2012) Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains. PLoS Genetics
8
: e1002777. DOI: 10.1371/journal.pgen.1002777 |
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Ambrožová K., Mandáková T., Bureš P.,
Neumann P., Leitch I., Koblížková A.,
Macas J., Lysák M. (2011) Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies Annals of Botany
107
: 255-268. DOI: 10.1093/aob/mcq235 |
