Publications
| Total found: 170 records |
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Medeiros M., Zheng X.,
Novák P., Wnek S., Chyan V., Escudero-Lourdes C., Gandolfi A. (2012) Global gene expression changes in human urothelial cells exposed to low-level monomethylarsonous acid Toxicology
291: 102-112.
DOI: 10.1016/j.tox.2011.11.002 |
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Neumann P.,
Navrátilová A., Schroeder-Reiter E.,
Koblížková A.,
Steinbauerová V., Chocholová E.,
Novák P., Wanner G.,
Macas J. (2012) Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains. PLoS Genetics
8: e1002777.
DOI: 10.1371/journal.pgen.1002777 |
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Novák P., Stampfer M., Munoz-Rodriguez J., Garbe J., Ehrich M., Futscher B., Jensen T. (2012) Cell-type specific DNA methylation patterns define human breast cellular identity PLoS ONE
7: e52299.
DOI: 10.1371/journal.pone.0052299 |
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Pagán H.,
Macas J.,
Novák P., Mcculloch E., Stevens R., Ray D. (2012) Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats Genome Biology and Evolution
4: 575-585.
DOI: 10.1093/gbe/evs038 |
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Piednoël M., Aberer A., Schneeweiss G.,
Macas J.,
Novák P., Gundlach H., Temsch E., Renner S. (2012) Next-Generation Sequencing Reveals the Impact of Repetitive DNA Across Phylogenetically Closely Related Genomes of Orobanchaceae Molecular Biology and Evolution
29: 3601-3611.
DOI: 10.1093/molbev/mss168 |
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Renny-Byfield S., Kovařík A., Chester M., Nichols R., Macas J.,
Novák P., Leitch A. (2012) Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum PLoS ONE
7: e36963.
DOI: 10.1371/journal.pone.0036963 |
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Ambrožová K., Mandáková T., Bureš P.,
Neumann P., Leitch I.,
Koblížková A.,
Macas J., Lysák M. (2011) Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies Annals of Botany
107: 255-268.
DOI: 10.1093/aob/mcq235 |
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Lake A.,
Novák P., Fisher C., Jackson J., Hardwick R., Billheimer D., Klimecki W., Cherrington N. (2011) Analysis of Global and Absorption, Distribution, Metabolism, and Elimination Gene Expression in the Progressive Stages of Human Nonalcoholic Fatty Liver Disease Drug Metabolism and Disposition
39: 1954-1960.
DOI: 10.1124/dmd.111.040592 |
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Macas J., Kejnovský E.,
Neumann P.,
Novák P.,
Koblížková A., Vyskot B. (2011) Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia PLoS ONE
6: e27335.
DOI: 10.1371/journal.pone.0027335 |
| Neumann P., Navrátilová A., Koblížková A., Kejnovský E., Hřibová E., Hobza R., Widmer A., Doležel J., Macas J. (2011) Plant centromeric retrotransposons: a structural and cytogenetic perspective Mobile DNA 2: DOI: 10.1186/1759-8753-2-4 |
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Renny-Byfield S., Chester M., Kovařík A., Le Comber S., Grandbastien M., Deloger M., Nichols R., Macas J.,
Novák P., Chase M., Leitch A. (2011) Next generation sequencing reveals genome downsizing in allopolyploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs Molecular Biology and Evolution
28: 2843-2854.
DOI: 10.1093/molbev/msr112 |
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Steinbauerová V.,
Neumann P.,
Novák P.,
Macas J. (2011) A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons Genetica
139: 1543-1555.
DOI: 10.1007/s10709-012-9654-9 |
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Torres G., Gong Z., Iovene M., Hirsch C., Buell C., Bryan G.,
Novák P., Macas J., Jiang J. (2011) Organization and evolution of subtelomeric satellite repeats in the potato genome G3: Genes, Genomes, Genetics
1: 85-92.
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Hřibová E.,
Neumann P., Matsumoto T., Roux N.,
Macas J., Doležel J. (2010) Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing BMC Plant Biology
10: 1-10.
DOI: 10.1186/1471-2229-10-204 |
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Macas J.,
Neumann P.,
Novák P., Jiang J. (2010) Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data Bioinformatics
26: 2101-2108.
DOI: 10.1093/bioinformatics/btq343 |
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Novák P.,
Neumann P.,
Macas J. (2010) Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data BMC Bioinformatics
11: 378-389.
DOI: 10.1186/1471-2105-11-378 |
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Jensen T.,
Novák P., Wnek S., Gandolfi A., Futscher B. (2009) Arsenicals produce stable progressive changes in DNA methylation patterns that are linked to malignant transformation of immortalized urothelial cells Toxicology and Applied Pharmacology
241: 221-229.
DOI: 10.1016/j.taap.2009.08.019 |
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Macas J.,
Koblížková A.,
Navrátilová A.,
Neumann P. (2009) Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats Gene
448: 198-206.
DOI: 10.1016/j.gene.2009.06.014 |
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Novák P., Jensen T., Garbe J., Sampfer M., Futscher B. (2009) Stepwise DNA Methylation Changes Are Linked to Escape from Defined Proliferation Barriers and Mammary Epithelial Cell Immortalization Cancer Research
69: 5251-5258.
DOI: 10.1158/0008-5472.CAN-08-4977 |
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Smýkal P., Kalendar R., Ford R.,
Macas J., Griga M. (2009) Evolutionary conserved lineage of Angela-family retrotransposons as a genome-wide microsatellite repeat dispersal agent Heredity
103: 157-167.
DOI: 10.1038/hdy.2009.45 |
