Publications
| Total found: 170 records |
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Weiss-Schneeweiss H., Leicht A., McCann J., Jang T.,
Macas J. (2015) Employing next generation sequencing to explore the repeat landscape of the plant genome. Next-Generation Sequencing in Plant Systematics. Koenigstein : Koeltz Scientific Books, 2015 - (Hörandl, E.; Appelhans, M.)
ISBN 978-3-87429-492-8: 155-179.
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Clarke D.,
Novák P., Lake A., Shipkova P., Aranibar N., Robertson D., Severson P., Reily M., Futscher B., Lehman-Mckeeman L., Cherrington N. (2014) Characterization of Hepatocellular Carcinoma Related Genes and Metabolites in Human Nonalcoholic Fatty Liver Disease Digestive Diseases and Sciences
59: 365-374.
DOI: 10.1007/s10620-013-2873-9 |
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Emadzade K., Jang T.,
Macas J., Kovařík A.,
Novák P., Parker J., Weiss-Schneeweiss H. (2014) Differential amplification of satellite PaB6 in chromosomally hyper-variable Prospero autumnale complex (Hyacinthaceae) Annals of botany
114 (8): 1597-1608.
DOI: 10.1093/aob/mcu178 |
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Garbe J., Vrba , Sputova K., Fuchs L.,
Novák P., Brothman A., Jackson M., Chin K., Labarge M., Watts G., Futscher B., Stampfer M. (2014) Immortalization of normal human mammary epithelial cells in two steps by direct targeting of senescence barriers does not require gross genomic alterations Cell cycle
13: 3423-3435.
DOI: 10.4161/15384101.2014.954456 |
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Medeiros M., Le T., Troup D.,
Novák P., Gandolfi A. (2014) Expression Of Selected Pathway-Marker Genes In Human Urothelial Cells Exposed Chronically To A Non-Cytotoxic Concentration Of Monomethylarsonous Acid Toxicology Reports
1: 421–434.
DOI: 10.1016/j.toxrep.2014.07.004 |
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Novák P., Hardwick R., Flores-Keown B., Zhao F., Klimecki W., Cherrington N. (2014) The Adaptive Endoplasmic Reticulum Stress Response to Lipotoxicity in Progressive Human Nonalcoholic Fatty Liver Disease Toxicological Sciences
137: 26-34.
DOI: 10.1093/toxsci/kft230 |
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Novák P., Hřibová E.,
Neumann P.,
Koblížková A., Doležel J.,
Macas J. (2014) Genome-wide analysis of repeat diversity across the family Musaceae PLoS ONE
9: e98918.
DOI: 10.1371/journal.pone.0098918 |
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Zhang H.,
Koblížková A., Wang K., Gong Z., Oliveira L., Torres G., Wu Y., Zhang W.,
Novák P., Buell C.,
Macas J., Jiang J. (2014) Boom-bust turnovers of megabase-sized centromeric DNA in Solanum species: Rapid evolution of DNA sequences associated with centromeres Plant Cell
26: 1436-1447.
DOI: 10.1105/tpc.114.123877 |
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Heckmann S.,
Macas J., Kumke K., Fuchs J., Schubert V., Ma L.,
Novák P.,
Neumann P., Taudien S., Platzer M., Houben A. (2013) The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization Plant Journal
73: 555-565.
DOI: 10.1111/tpj.12054 |
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Klemme S., Banaei-Moghaddam A.,
Macas J., Wicker T.,
Novák P., Houben A. (2013) High-copy sequences reveal distinct evolution of the rye B chromosome New Phytologist
199: 550-558.
DOI: 10.1111/nph.12289 |
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Kopecký D., Martis M., Cihalikova J., Hřibová E., Vrána J., Bartoš J., Kopecka J., Cattonaro F., Stoces S.,
Novák P., Neumann P., Macas J., Šimková H., Studer B., Asp T., Baird J., Navratil P., Karafiatova M., Kubaláková M., Safar J., Mayer K. (2013) Flow sorting and sequencing meadow fescue chromosome 4F Plant Physiology
163: 1323-1337.
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Lake A.,
Novák P., Shipkova P., Aranibar N., Robertson D., Reily M., Lu Z., Lehman-Mckeeman L., Cherrington N. (2013) Decreased hepatotoxic bile acid composition and altered synthesis in progressive human nonalcoholic fatty liver disease Toxicology and Applied Pharmacology
268: 132-140.
DOI: 10.1016/j.taap.2013.01.022 |
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Novák P.,
Neumann P., Pech J., Steinhaisl J.,
Macas J. (2013) RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads Bioinformatics
29: 792-793.
DOI: 10.1093/bioinformatics/btt054 |
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Renny-Byfield S., Kovařík A., Kelly L.,
Macas J.,
Novák P., Chase M., Nichols R., Pancholi M., Grandbastien M., Leitch A. (2013) Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences. Plant Journal
74: 829-839.
DOI: 10.1111/tpj.12168 |
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Šteflová P., Tokan V., Vogel I., Lexa M., Macas J.,
Novák P., Hobza R., Vyskot B., Kejnovský E. (2013) Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa Genome Biology and Evolution
5: 769-782.
DOI: 10.1093/gbe/evt049 |
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Banaei-Moghaddam A., Schubert V., Kumke K., Weiβ O., Klemme S., Nagaki K.,
Macas J., González-Sánchez M., Heredia V., Gómez-Revilla D., González-García M., Vega J., Puertas-Houben A. (2012) Nondisjunction in Favor of a Chromosome: The Mechanism of Rye B Chromosome Drive during Pollen Mitosis Plant Cell
24: 4124-4134.
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Gong Z., Wu Y.,
Koblížková A., Torres G., Wang K., Iovene M.,
Neumann P., Zhang W.,
Novák P., Buell C.,
Macas J., Jiang J. (2012) Repeatless and repeat-based centromeres in potato: implications for centromere evolution Plant Cell
24: 3559-3574.
DOI: 10.1105/tpc.112.100511 |
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Kelly L., Leitch A., Fay M., Renny-Byfield S., Pellicer J.,
Macas J., Leitch I. (2012) Why size really matters when sequencing plant genomes Plant Ecology & Diversity
5: 415-524.
DOI: 10.1080/17550874.2012.716868 |
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Martis M., Klemme S., Banaei-Moghaddam A., Blattner F.,
Macas J., Schmutzer T., Scholz U., Gundlach H., Wicker T., Šimková H.,
Novák P.,
Neumann P., Kubaláková M., Bauer E., Haseneyer G., Fuchs J., Doležel J., Stein N., Mayer K., Houben A. (2012) Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences Proceedings of the National Academy of Sciences of the United States of America
109: 13343-13346.
DOI: 10.1073/pnas.1204237109 |
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Matyášek R., Renny-Byfield S., Fulneček J.,
Macas J., Grandbastien M., Nichols R., Kovařík A., Leitch A. (2012) Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids BMC Genomics
13: 722.
DOI: 10.1186/1471-2164-13-722 |
