Publications
| Total found: 170 records |
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Avila Robledillo L.,
Neumann P.,
Koblížková A.,
Novák P.,
Vrbová I.,
Macas J. (2020) Extraordinary sequence diversity and promiscuity of centromeric satellites in the legume tribe Fabeae Molecular biology and evolution
37: 2341-2356.
DOI: 10.1093/molbev/msaa090 |
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Burstin J., Kreplak J.,
Macas J., Lichtenzveig J. (2020) Pisum sativum (Pea). Genome of the Month. Trends in Genetics
36: 312-313.
DOI: 10.1016/j.tig.2019.12.009 |
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Hoang P.T.N., Fiebig A.,
Novák P.,
Macas J., Cao H., Stepanenko A., Chen G., Borisjuk N., Scholz U., Schubert I. (2020) Chromosome-scale genome assembly for the duckweed /Spirodela intermedia/, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries Scientific Reports
10: 19230.
DOI: 10.1038/s41598-020-75728-9 |
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McCann J.,
Macas J.,
Novák P., Stuessy T.F., Villasenor J.L., Weiss-Schneeweiss H. (2020) Differential Genome Size and Repetitive DNA Evolution in Diploid Species of Melampodium sect. Melampodium (Asteraceae) Frontiers in Plant Science
11: 362.
DOI: 10.3389/fpls.2020.00362 |
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Novák P., Guignard M.S.,
Neumann P., Kelly L., Mlinarec J.,
Koblížková A., Dodsworth S., Kovařík A., Pellicer J., Wang W.,
Macas J., Leicht I.J., Leicht A. (2020) Repeat-sequence turnover shifts fundamentally in species with large genomes Nature Plants
6: 1325–1329.
DOI: 10.1038/s41477-020-00785-x |
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Novák P.,
Neumann P.,
Macas J. (2020) Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2 Nature Protocols
15: 3745-3776.
DOI: 10.1038/s41596-020-0400-y |
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Oliveira L.,
Neumann P.,
Jang T.,
Klemme S., Schubert V.,
Koblížková A., Houben A.,
Macas J. (2020) Mitotic spindle attachment to the holocentric chromosomes of Cuscuta europaea does not correlate with the distribution of CENH3 chromatin Frontiers in plant science
10: 1799.
DOI: 10.3389/fpls.2019.01799 |
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Schubert V.,
Neumann P., Marques A., Heckmann S.,
Macas J., Pedrosa-Harand A., Schubert I.,
Jang T., Houben A. (2020) Super-Resolution Microscopy Reveals Diversity of Plant Centromere Architecture International Journal of Molecular Sciences
21 (10): 3488.
DOI: 10.3390/ijms21103488 |
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Vondrak T.,
Avila Robledillo L.,
Novák P.,
Koblížková A.,
Neumann P.,
Macas J. (2020) Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats The Plant Journal
101: 484–500.
DOI: 10.1111/tpj.14546 |
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Finke A., Mandáková T., Nawaz K., Vu G.,
Novák P.,
Macas J., Lysak M.A., Pečinka A. (2019) Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda The Plant Journal
99: 1066–1079.
DOI: doi.org/10.1111/tpj.14380 |
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Kapustová V., Tulpová Z., Toegelová H.,
Novák P.,
Macas J., Karafiátová M., Doležel J., Šimková H. (2019) The Dark Matter of Large Cereal Genomes: Long Tandem Repeats International journal of molecular sciences
20 (10): 2483.
DOI: 10.3390/ijms20102483 |
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Kreplak J., Madoui M., Cápal P.,
Novák P., Labadie K., Aubert G., Bayer P.E., Gali K.K., Syme R.A., Main D., Klein A., Bérard A.,
Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee H.T., Kougbeadjo A., Térézol M., Huneau C., Turo Ch.J., Mohellibi N.,
Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury J.-M., Batley J., Le Paslier M.-Ch., Ellis N., Warkentin T., Coyne C., Salse J., Edwards D., Lichtenzveig J.,
Macas J., Doležel J., Wincker P., Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution. Nature Genetics
51: 1411–1422.
DOI: 10.1038/s41588-019-0480-1 |
| Neumann P., Novák P., Hoštáková N., Macas J. (2019) Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification Mobile DNA 10: DOI: 10.1186/s13100-018-0144-1 |
| Tulpová Z., Toegelová H., Lapitan N.L.V., Peairs F.B., Macas J., Novák P., Lukaszewski A.J., Kopecký D., Mazáčová M., Vrána J., Holušová K., Leroy P., Doležel J., Šimková H. (2019) Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies The Plant Genome 12 (2): DOI: 10.3835/ plantgenome2018.09.0065 |
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Wu D.D., Ruban A., Fuchs J.,
Macas J.,
Novák P., Vaio M., Zhou Y.H., Houben A. (2019) Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes New Phytologist
223: 1340–1352.
DOI: 10.1111/nph.15875 |
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Avila Robledillo L.,
Koblížková A.,
Novák P.,
Böttinger K.,
Vrbová I.,
Neumann P., Schubert I.,
Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports
8: 5838.
DOI: 10.1038/s41598-018-24196-3 |
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McCann J., Jang T.,
Macas J., Schneeweiss G., Matzke N.J.,
Novák P., Stuessy T.F., Villasenor J.L., Weiss-Schneeweiss H. (2018) Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae) Systematic Biology
67 (6): 1010–1024.
DOI: 10.1093/sysbio/syy024 |
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Clarke J.D.,
Novák P., Lake A., Hardwick R., Cherrington N. (2017) Impaired N-linked glycosylation of uptake and efflux transporters in human non-alcoholic fatty liver disease Liver International
37 (7): 1074-1081.
DOI: 10.1111/liv.13362 |
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Han J.H., Dzierlenga A.L., Lu Z., Billheimer D., Torabzadeh E., Lake A., Li H.,
Novák P., Shipkova P., Aranibar N. (2017) Metabolomic Profiling Distinction of Human Nonalcoholic Fatty Liver Disease Progression from a Common Rat Model Obesity
26 (6): 1069-1076.
DOI: 10.1002/oby.21855 |
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Novák P.,
Avila Robledillo L.,
Koblížková A.,
Vrbová I.,
Neumann P.,
Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research
45 (12): e11.
DOI: 10.1093/nar/gkx257 |
