Publications
| Total found: 170 records |
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Braz G.T., Van-Lume B., de Resende K.F.M., Cardoso F.P.,
Oliveira L., de Andrade M.J.G., Souza G., Torres G. (2024) Cytomolecular trends in iChamaecrista/i Moench (Caesalpinioideae, Leguminosae) diversification Genetica
152 (1): 51-61.
DOI: 10.1007/s10709-024-00205-4 |
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Chen J., Bartoš J., Boudichevskaia A., Voigt A., Rabanus-Wallace M.T., Dreissig S., Tulpová Z., Šimková H.,
Macas J., Kim G., Buhl J., Bürstenbinder K., Blattner F., Fuchs J., Schmutzer T., Himmelbach A., Schubert V., Houben A. (2024) The genetic mechanism of B chromosome drive in rye illuminated by chromosome-scale assembly Nature Communications
15: 9686.
DOI: 10.1038/s41467-024-53799-w |
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Mata-Sucre Y., Krátká M.,
Oliveira L.,
Neumann P.,
Macas J., Schubert V., Huettel B., Kejnovský E., Houben A., Pedrosa-Harand A., Souza G., Marques A. (2024) Repeat-based holocentromeres of the woodrush Luzula sylvatica reveal insights into the evolutionary transition to holocentricity Nature Communications
15: 9565.
DOI: 10.1038/s41467-024-53944-5 |
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Novák P.,
Hoštáková N.,
Neumann P.,
Macas J. (2024) DANTE and DANTE_LTR: computational pipelines implementing lineage-centered annotation of LTR-retrotransposons in plant genomes. NAR Genomics and Bioinformatics
6(3): lqae113.
DOI: 10.1093/nargab/lqae113 |
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Oliveira L.,
Neumann P., Mata-Sucre Y., Kuo Y.-T., Marques A., Schubert V.,
Macas J. (2024) KNL1 and NDC80 represent new universal markers for the detection of centromeres in plants. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology
3(1): 3.
DOI: 10.1007/s10577-024-09747-x |
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Vigouroux M.,
Novák P.,
Oliveira L., Santos C., Cheema J., Wouters R.H.M., Paajanen P., Vickers M.,
Koblížková A., Vaz Patto M.,
Macas J., Steuernagel B., Martin C., Emmrich P.M.F. (2024) A chromosome-scale reference genome of grasspea (Lathyrus sativus) Scientific Data
11: 1035.
DOI: 10.1038/s41597-024-03868-y |
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Xin H., Wang Y., Zhang W., Yu B.,
Neumann P., Ning Y., Zhang T., Wu Y., Jiang N., Jiang J., Xi M. (2024) Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes Plant Physiology
195(4): 2787–2798.
DOI: 10.1093/plphys/kiae214 |
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Edwards A., Njaci I., Sarkar A., Jiang Z., Kaithakottil G.G., Moore C., Cheema J., Stevenson C.E.M., Rejzek M.,
Novák P., Vigouroux M., Vickers M., Wouters R.H.M., Paajanen P., Steurnagel B., Moore J.D., Higgins J., Swarbreck D., Martens S., Kim C.Y., Weng J.-K., Mundree S., Kilian B., Kumar S., Loose M., Yant L.,
Macas J., Wang T.L., Martin C., Emmrich P.M.F. (2023) Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus Nature Communications
14: 876.
DOI: 10.1038/s41467-023-36503-2 |
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Jayakodi M., Golicz A.A., Kreplak J., Fechete L.I., ...,
Koblížková A.,
Neumann P.,
Novák P.,
Avila Robledillo L.,
Macas J., et al. (2023) The giant diploid faba genome unlocks variation in a global protein crop Nature
615 (7953): 652–659.
DOI: 10.1038/s41586-023-05791-5 |
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Kuo Y.-T., Camara A.S., Schubert V.,
Neumann P.,
Macas J., Melzer M., Chen J., Fuchs J., Abel S., Klocke E., Huettel B., Himmelbach A., Demidov D., Dunemann F., Mascher M., Ishii T., Marques A., Houben A. (2023) Holocentromeres can consist of merely a few megabase-sized satellite arrays Nature Communications
14: 3502.
DOI: 10.1038/s41467-023-38922-7 |
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Macas J.,
Avila Robledillo L., Kreplak J.,
Novák P.,
Koblížková A.,
Vrbová I., Burstin J.,
Neumann P. (2023) Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes PLoS Genetics
19(2): e1010633.
DOI: 10.1371/journal.pgen.1010633 |
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Neumann P.,
Oliveira L.,
Jang T.,
Novák P.,
Koblížková A., Schubert V., Houben A.,
Macas J. (2023) Disruption of the standard kinetochore in holocentric Cuscuta species Proceedings of the National Academy of Sciences
120: e2300877120.
DOI: 10.1073/pnas.230087712 |
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Ellis N., Vaz Patto M., Rubiales D.,
Macas J.,
Novák P., Kumar S., Hao X., Edwards A., Sarkar A., Emmrich P. (2022) Grasspea In: Chapman, M.A. (eds) Underutilised Crop Genomes. Compendium of Plant Genomes. Springer, Cham.
217–228.
DOI: 10.1007/978-3-031-00848-1_12 |
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Hofstatter P.G., Thangavel G., Lux T.,
Neumann P.,
Vondrak T.,
Novák P., Zhang M., Costa L., Castellani M., Scott A., Toegelová H., Fuchs J., Mata-Sucre Y., Dias Y., Vanzela A., Huettel B., Almeida C.C.S., Šimková H., Souza G., Pedrosa-Harand A.,
Macas J., Mayer K., Houben A., Marques A. (2022) Repeat-based holocentromeres influence genome architecture and karyotype evolution Cell
185: 1-16.
DOI: 10.1016/j.cell.2022.06.045 |
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Schley R.J., Pellicer J., Ge X.-J., Barrett C., Bellot S., Guignard M.S.,
Novák P., Suda J., Fraser D., Baker W.J., Dodsworth S.,
Macas J., Leitch A., Leitch I. (2022) The ecology of palm genomes: repeat-associated genome size expansion is constrained by aridity New Phytologist
236(2): 433-446.
DOI: 10.1111/nph.18323 |
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Tulpová Z., Kovařík A., Toegelová H., Navrátilová P., Kapustová V., Hřibová E., Vrána J.,
Macas J., Doležel J., Šimková H. (2022) Fine structure and transcription dynamics of bread wheat ribosomal DNA loci deciphered by a multi-omics approach The Plant Genome
15(1): e20191.
DOI: 10.1002/tpg2.20191 |
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Hoang P.T.N., Rouillard J.M.,
Macas J., Kubalová I., Schubert V., Schubert I. (2021) Limitation of current probe design for oligo-cross-FISH, exemplified by chromosome evolution studies in duckweeds Chromosoma
130: 15-25.
DOI: 10.1007/s00412-020-00749-2 |
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Neumann P., Oliveira L., Čížková J.,
Jang T.,
Klemme S.,
Novák P., Stelmach K.,
Koblížková A., Doležel J.,
Macas J. (2021) Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta New Phytologist
229: 2365–2377.
DOI: 10.1111/nph.17003 |
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Vondrak T.,
Oliveira L.,
Novák P.,
Koblížková A.,
Neumann P.,
Macas J. (2021) Complex sequence organization of heterochromatin in the holocentric plant Cuscuta europaea elucidated by the computational analysis of nanopore reads Computational and Structural Biotechnology Journal
19: 2179-2189.
DOI: 0.1016/j.csbj.2021.04.011 |
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Ainouche A., Paris A., Giraud D., Keller J., Raimondeau P., Mahé P.,
Neumann P.,
Novák P.,
Macas J., Ainouche M., Salmon A., Martin G.E. (2020) The Repetitive Content in Lupin Genomes In: Singh K., Kamphuis L., Nelson M. (eds) The Lupin Genome. Compendium of Plant Genomes.
161-168.
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